PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009768300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 481aa    MW: 53879.3 Da    PI: 4.3901
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009768300.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.3e-2070123155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++y+GVr++  +g+WvAeIr+ +++ ng  kr +lg+f ta eAa a+++a+k ++g
  XP_009768300.1  70 CKYRGVRQRT-WGKWVAEIREpVYNsNG--KRLWLGTFSTAVEAAIAYDEAAKVMYG 123
                     79*****999.**********7777665..***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.6E-1370123IPR001471AP2/ERF domain
CDDcd000189.55E-3170132No hitNo description
SuperFamilySSF541718.5E-2171132IPR016177DNA-binding domain
SMARTSM003802.4E-3471137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-2971132IPR001471AP2/ERF domain
PROSITE profilePS5103222.5171131IPR001471AP2/ERF domain
PRINTSPR003672.0E-97283IPR001471AP2/ERF domain
PRINTSPR003672.0E-997113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MSSHNFQRRM RRRRNGSASI EETLSMWKNQ KQELNATLDG GIKKKTRNFP AKGSKKGCMR  60
GKGGPENLGC KYRGVRQRTW GKWVAEIREP VYNSNGKRLW LGTFSTAVEA AIAYDEAAKV  120
MYGQNAILNF PDYSVQNSEL ANYSTSVSIA RTASLESSES SVEDSRIEPD LQISHTPDDG  180
VVAITDGKTI LDDPTNLCSD GRADGDPRAQ QDSSVCCLNM ESVVMEVDDS LDDIKGLNCS  240
TRIDSEPILE PASSCVKVQT PSDNDFVQDR RLECVDDANK VSNSKHILHH EITDVKPNDS  300
IFQHHDVLIQ NENYESGDQV LLPCDPIALT DYDCLVNALQ EQPLDFRSSD NTSAYIRSHL  360
EYAEYLLMED NNTTEATTVS DTFWLNENIN LQSFLDESFD VNNLKNEELP DNYNYDQQIN  420
LLKSRTNAEV HSDGVISKGG ESNELCINIP GHEDHGTEVN MEDLYILNSH FDISSFLGDN  480
F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2069131363ATERF1
3gcc_A5e-2069131363ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1712RRMRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768300.10.0PREDICTED: uncharacterized protein LOC104219331
RefseqXP_016441364.10.0PREDICTED: uncharacterized protein LOC107766960
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79651530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.13e-36ERF family protein